Gene expression analysis of flax seed development.
Identifieur interne : 002E71 ( Main/Exploration ); précédent : 002E70; suivant : 002E72Gene expression analysis of flax seed development.
Auteurs : Prakash Venglat [Canada] ; Daoquan Xiang ; Shuqing Qiu ; Sandra L. Stone ; Chabane Tibiche ; Dustin Cram ; Michelle Alting-Mees ; Jacek Nowak ; Sylvie Cloutier ; Michael Deyholos ; Faouzi Bekkaoui ; Andrew Sharpe ; Edwin Wang ; Gordon Rowland ; Gopalan Selvaraj ; Raju DatlaSource :
- BMC plant biology [ 1471-2229 ] ; 2011.
Descripteurs français
- KwdFr :
- ADN complémentaire (génétique), ADN des plantes (génétique), Adhésifs (métabolisme), Analyse de profil d'expression de gènes (MeSH), Analyse de regroupements (MeSH), Flavonoïdes (métabolisme), Graines (croissance et développement), Graines (génétique), Graines (métabolisme), Lignanes (métabolisme), Lin (croissance et développement), Lin (génétique), Lin (métabolisme), Produits agricoles (croissance et développement), Produits agricoles (génétique), Produits agricoles (métabolisme), Régulation de l'expression des gènes au cours du développement (MeSH), Régulation de l'expression des gènes végétaux (MeSH), Séquence nucléotidique (MeSH), Étiquettes de séquences exprimées (MeSH).
- MESH :
- croissance et développement : Graines, Lin, Produits agricoles.
- génétique : ADN complémentaire, ADN des plantes, Graines, Lin, Produits agricoles.
- métabolisme : Adhésifs, Flavonoïdes, Graines, Lignanes, Lin, Produits agricoles.
- Analyse de profil d'expression de gènes, Analyse de regroupements, Régulation de l'expression des gènes au cours du développement, Régulation de l'expression des gènes végétaux, Séquence nucléotidique, Étiquettes de séquences exprimées.
English descriptors
- KwdEn :
- Adhesives (metabolism), Base Sequence (MeSH), Cluster Analysis (MeSH), Crops, Agricultural (genetics), Crops, Agricultural (growth & development), Crops, Agricultural (metabolism), DNA, Complementary (genetics), DNA, Plant (genetics), Expressed Sequence Tags (MeSH), Flavonoids (metabolism), Flax (genetics), Flax (growth & development), Flax (metabolism), Gene Expression Profiling (MeSH), Gene Expression Regulation, Developmental (MeSH), Gene Expression Regulation, Plant (MeSH), Lignans (metabolism), Seeds (genetics), Seeds (growth & development), Seeds (metabolism).
- MESH :
- chemical , genetics : DNA, Complementary, DNA, Plant.
- chemical , metabolism : Adhesives, Flavonoids, Lignans.
- genetics : Crops, Agricultural, Flax, Seeds.
- growth & development : Crops, Agricultural, Flax, Seeds.
- metabolism : Crops, Agricultural, Flax, Seeds.
- Base Sequence, Cluster Analysis, Expressed Sequence Tags, Gene Expression Profiling, Gene Expression Regulation, Developmental, Gene Expression Regulation, Plant.
Abstract
BACKGROUND
Flax, Linum usitatissimum L., is an important crop whose seed oil and stem fiber have multiple industrial applications. Flax seeds are also well-known for their nutritional attributes, viz., omega-3 fatty acids in the oil and lignans and mucilage from the seed coat. In spite of the importance of this crop, there are few molecular resources that can be utilized toward improving seed traits. Here, we describe flax embryo and seed development and generation of comprehensive genomic resources for the flax seed.
RESULTS
We describe a large-scale generation and analysis of expressed sequences in various tissues. Collectively, the 13 libraries we have used provide a broad representation of genes active in developing embryos (globular, heart, torpedo, cotyledon and mature stages) seed coats (globular and torpedo stages) and endosperm (pooled globular to torpedo stages) and genes expressed in flowers, etiolated seedlings, leaves, and stem tissue. A total of 261,272 expressed sequence tags (EST) (GenBank accessions LIBEST_026995 to LIBEST_027011) were generated. These EST libraries included transcription factor genes that are typically expressed at low levels, indicating that the depth is adequate for in silico expression analysis. Assembly of the ESTs resulted in 30,640 unigenes and 82% of these could be identified on the basis of homology to known and hypothetical genes from other plants. When compared with fully sequenced plant genomes, the flax unigenes resembled poplar and castor bean more than grape, sorghum, rice or Arabidopsis. Nearly one-fifth of these (5,152) had no homologs in sequences reported for any organism, suggesting that this category represents genes that are likely unique to flax. Digital analyses revealed gene expression dynamics for the biosynthesis of a number of important seed constituents during seed development.
CONCLUSIONS
We have developed a foundational database of expressed sequences and collection of plasmid clones that comprise even low-expressed genes such as those encoding transcription factors. This has allowed us to delineate the spatio-temporal aspects of gene expression underlying the biosynthesis of a number of important seed constituents in flax. Flax belongs to a taxonomic group of diverse plants and the large sequence database will allow for evolutionary studies as well.
DOI: 10.1186/1471-2229-11-74
PubMed: 21529361
PubMed Central: PMC3107784
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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xml:lang="en"><term>Adhesives (metabolism)</term><term>Base Sequence (MeSH)</term><term>Cluster Analysis (MeSH)</term><term>Crops, Agricultural (genetics)</term><term>Crops, Agricultural (growth & development)</term><term>Crops, Agricultural (metabolism)</term><term>DNA, Complementary (genetics)</term><term>DNA, Plant (genetics)</term><term>Expressed Sequence Tags (MeSH)</term><term>Flavonoids (metabolism)</term><term>Flax (genetics)</term><term>Flax (growth & development)</term><term>Flax (metabolism)</term><term>Gene Expression Profiling (MeSH)</term><term>Gene Expression Regulation, Developmental (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Lignans (metabolism)</term><term>Seeds (genetics)</term><term>Seeds (growth & development)</term><term>Seeds (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN complémentaire (génétique)</term><term>ADN des plantes (génétique)</term><term>Adhésifs (métabolisme)</term><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Analyse de regroupements (MeSH)</term><term>Flavonoïdes (métabolisme)</term><term>Graines (croissance et développement)</term><term>Graines (génétique)</term><term>Graines (métabolisme)</term><term>Lignanes (métabolisme)</term><term>Lin (croissance et développement)</term><term>Lin (génétique)</term><term>Lin (métabolisme)</term><term>Produits agricoles (croissance et développement)</term><term>Produits agricoles (génétique)</term><term>Produits agricoles (métabolisme)</term><term>Régulation de l'expression des gènes au cours du développement (MeSH)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Étiquettes de séquences exprimées (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Complementary</term><term>DNA, Plant</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Adhesives</term><term>Flavonoids</term><term>Lignans</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Graines</term><term>Lin</term><term>Produits agricoles</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Crops, Agricultural</term><term>Flax</term><term>Seeds</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Crops, Agricultural</term><term>Flax</term><term>Seeds</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN complémentaire</term><term>ADN des plantes</term><term>Graines</term><term>Lin</term><term>Produits agricoles</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Crops, Agricultural</term><term>Flax</term><term>Seeds</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Adhésifs</term><term>Flavonoïdes</term><term>Graines</term><term>Lignanes</term><term>Lin</term><term>Produits agricoles</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Cluster Analysis</term><term>Expressed Sequence Tags</term><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Developmental</term><term>Gene Expression Regulation, Plant</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Analyse de regroupements</term><term>Régulation de l'expression des gènes au cours du développement</term><term>Régulation de l'expression des gènes végétaux</term><term>Séquence nucléotidique</term><term>Étiquettes de séquences exprimées</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Flax, Linum usitatissimum L., is an important crop whose seed oil and stem fiber have multiple industrial applications. Flax seeds are also well-known for their nutritional attributes, viz., omega-3 fatty acids in the oil and lignans and mucilage from the seed coat. In spite of the importance of this crop, there are few molecular resources that can be utilized toward improving seed traits. Here, we describe flax embryo and seed development and generation of comprehensive genomic resources for the flax seed.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>We describe a large-scale generation and analysis of expressed sequences in various tissues. Collectively, the 13 libraries we have used provide a broad representation of genes active in developing embryos (globular, heart, torpedo, cotyledon and mature stages) seed coats (globular and torpedo stages) and endosperm (pooled globular to torpedo stages) and genes expressed in flowers, etiolated seedlings, leaves, and stem tissue. A total of 261,272 expressed sequence tags (EST) (GenBank accessions LIBEST_026995 to LIBEST_027011) were generated. These EST libraries included transcription factor genes that are typically expressed at low levels, indicating that the depth is adequate for in silico expression analysis. Assembly of the ESTs resulted in 30,640 unigenes and 82% of these could be identified on the basis of homology to known and hypothetical genes from other plants. When compared with fully sequenced plant genomes, the flax unigenes resembled poplar and castor bean more than grape, sorghum, rice or Arabidopsis. Nearly one-fifth of these (5,152) had no homologs in sequences reported for any organism, suggesting that this category represents genes that are likely unique to flax. Digital analyses revealed gene expression dynamics for the biosynthesis of a number of important seed constituents during seed development.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>We have developed a foundational database of expressed sequences and collection of plasmid clones that comprise even low-expressed genes such as those encoding transcription factors. This has allowed us to delineate the spatio-temporal aspects of gene expression underlying the biosynthesis of a number of important seed constituents in flax. Flax belongs to a taxonomic group of diverse plants and the large sequence database will allow for evolutionary studies as well.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21529361</PMID><DateCompleted><Year>2011</Year><Month>08</Month><Day>18</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN><JournalIssue CitedMedium="Internet"><Volume>11</Volume><PubDate><Year>2011</Year><Month>Apr</Month><Day>29</Day></PubDate></JournalIssue><Title>BMC plant biology</Title><ISOAbbreviation>BMC Plant Biol</ISOAbbreviation></Journal><ArticleTitle>Gene expression analysis of flax seed development.</ArticleTitle><Pagination><MedlinePgn>74</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2229-11-74</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Flax, Linum usitatissimum L., is an important crop whose seed oil and stem fiber have multiple industrial applications. Flax seeds are also well-known for their nutritional attributes, viz., omega-3 fatty acids in the oil and lignans and mucilage from the seed coat. In spite of the importance of this crop, there are few molecular resources that can be utilized toward improving seed traits. Here, we describe flax embryo and seed development and generation of comprehensive genomic resources for the flax seed.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">We describe a large-scale generation and analysis of expressed sequences in various tissues. Collectively, the 13 libraries we have used provide a broad representation of genes active in developing embryos (globular, heart, torpedo, cotyledon and mature stages) seed coats (globular and torpedo stages) and endosperm (pooled globular to torpedo stages) and genes expressed in flowers, etiolated seedlings, leaves, and stem tissue. A total of 261,272 expressed sequence tags (EST) (GenBank accessions LIBEST_026995 to LIBEST_027011) were generated. These EST libraries included transcription factor genes that are typically expressed at low levels, indicating that the depth is adequate for in silico expression analysis. Assembly of the ESTs resulted in 30,640 unigenes and 82% of these could be identified on the basis of homology to known and hypothetical genes from other plants. When compared with fully sequenced plant genomes, the flax unigenes resembled poplar and castor bean more than grape, sorghum, rice or Arabidopsis. Nearly one-fifth of these (5,152) had no homologs in sequences reported for any organism, suggesting that this category represents genes that are likely unique to flax. Digital analyses revealed gene expression dynamics for the biosynthesis of a number of important seed constituents during seed development.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">We have developed a foundational database of expressed sequences and collection of plasmid clones that comprise even low-expressed genes such as those encoding transcription factors. This has allowed us to delineate the spatio-temporal aspects of gene expression underlying the biosynthesis of a number of important seed constituents in flax. Flax belongs to a taxonomic group of diverse plants and the large sequence database will allow for evolutionary studies as well.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Venglat</LastName><ForeName>Prakash</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Plant Biotechnology Institute, NRC, 110 Gymnasium Place, Saskatoon, Saskatchewan, S7N 0W9, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xiang</LastName><ForeName>Daoquan</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Qiu</LastName><ForeName>Shuqing</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Stone</LastName><ForeName>Sandra L</ForeName><Initials>SL</Initials></Author><Author ValidYN="Y"><LastName>Tibiche</LastName><ForeName>Chabane</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Cram</LastName><ForeName>Dustin</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Alting-Mees</LastName><ForeName>Michelle</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Nowak</LastName><ForeName>Jacek</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Cloutier</LastName><ForeName>Sylvie</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Deyholos</LastName><ForeName>Michael</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Bekkaoui</LastName><ForeName>Faouzi</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Sharpe</LastName><ForeName>Andrew</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Edwin</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Rowland</LastName><ForeName>Gordon</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Selvaraj</LastName><ForeName>Gopalan</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Datla</LastName><ForeName>Raju</ForeName><Initials>R</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2011</Year><Month>04</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Plant Biol</MedlineTA><NlmUniqueID>100967807</NlmUniqueID><ISSNLinking>1471-2229</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000269">Adhesives</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018076">DNA, Complementary</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005419">Flavonoids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D017705">Lignans</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000269" MajorTopicYN="N">Adhesives</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018556" MajorTopicYN="N">Crops, Agricultural</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" 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PubStatus="received"><Year>2011</Year><Month>02</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2011</Year><Month>04</Month><Day>29</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2011</Year><Month>5</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>5</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>8</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">21529361</ArticleId><ArticleId IdType="pii">1471-2229-11-74</ArticleId><ArticleId IdType="doi">10.1186/1471-2229-11-74</ArticleId><ArticleId IdType="pmc">PMC3107784</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Cell. 1998 Jun 26;93(7):1195-205</Citation><ArticleIdList><ArticleId IdType="pubmed">9657152</ArticleId></ArticleIdList></Reference><Reference><Citation>Dev Cell. 2004 Sep;7(3):373-85</Citation><ArticleIdList><ArticleId IdType="pubmed">15363412</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Genet Genomics. 2007 Aug;278(2):149-65</Citation><ArticleIdList><ArticleId IdType="pubmed">17503083</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2007 Dec;19(12):4007-21</Citation><ArticleIdList><ArticleId IdType="pubmed">18165329</ArticleId></ArticleIdList></Reference><Reference><Citation>Biochim Biophys Acta. 1981 Jan 29;652(1):1-15</Citation><ArticleIdList><ArticleId IdType="pubmed">7213728</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2000 Jun;123(2):453-62</Citation><ArticleIdList><ArticleId IdType="pubmed">10859176</ArticleId></ArticleIdList></Reference><Reference><Citation>Ann Bot. 2003 Apr;91(5):547-57</Citation><ArticleIdList><ArticleId IdType="pubmed">12646499</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Plant Biol. 2000 Oct;3(5):423-34</Citation><ArticleIdList><ArticleId IdType="pubmed">11019812</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2004 Jun;135(2):745-55</Citation><ArticleIdList><ArticleId IdType="pubmed">15173566</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W459-62</Citation><ArticleIdList><ArticleId IdType="pubmed">16845049</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Plant Physiol Plant Mol Biol. 2001 Jun;52:335-361</Citation><ArticleIdList><ArticleId IdType="pubmed">11337402</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Plant Biol. 2006;57:405-30</Citation><ArticleIdList><ArticleId IdType="pubmed">16669768</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2003 Jan;15(1):5-18</Citation><ArticleIdList><ArticleId IdType="pubmed">12509518</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Sci. 2000 Feb 21;151(2):171-181</Citation><ArticleIdList><ArticleId IdType="pubmed">10808073</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2003 Oct;133(2):653-63</Citation><ArticleIdList><ArticleId IdType="pubmed">14512519</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 1995 Aug;7(8):1271-82</Citation><ArticleIdList><ArticleId IdType="pubmed">7549483</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2009 Jun;119(1):53-63</Citation><ArticleIdList><ArticleId IdType="pubmed">19357828</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2001 Sep 25;98(20):11806-11</Citation><ArticleIdList><ArticleId IdType="pubmed">11573014</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2008 Sep;148(1):132-41</Citation><ArticleIdList><ArticleId IdType="pubmed">18667723</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 1994 Nov;6(11):1567-82</Citation><ArticleIdList><ArticleId IdType="pubmed">7827492</ArticleId></ArticleIdList></Reference><Reference><Citation>J Nat Prod. 2001 Nov;64(11):1388-97</Citation><ArticleIdList><ArticleId IdType="pubmed">11720519</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation><ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId></ArticleIdList></Reference><Reference><Citation>Planta. 1996;198(3):480-7</Citation><ArticleIdList><ArticleId IdType="pubmed">8717139</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2006 Oct 1;22(19):2405-12</Citation><ArticleIdList><ArticleId IdType="pubmed">16882653</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2006 Apr 1;22(7):808-14</Citation><ArticleIdList><ArticleId IdType="pubmed">16418236</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 1996 Mar;110(3):721-729</Citation><ArticleIdList><ArticleId IdType="pubmed">12226214</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2010 Sep;28(9):951-6</Citation><ArticleIdList><ArticleId IdType="pubmed">20729833</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Bot. 2009 Aug;96(8):1551-70</Citation><ArticleIdList><ArticleId IdType="pubmed">21628300</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2003 Jan 17;299(5605):396-9</Citation><ArticleIdList><ArticleId IdType="pubmed">12532018</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Plant Physiol Plant Mol Biol. 1997 Jun;48:109-136</Citation><ArticleIdList><ArticleId IdType="pubmed">15012259</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2010;11:592</Citation><ArticleIdList><ArticleId IdType="pubmed">20964859</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2004 Jan;134(1):296-306</Citation><ArticleIdList><ArticleId IdType="pubmed">14701918</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Biol (Stuttg). 2005 Jan;7(1):23-32</Citation><ArticleIdList><ArticleId IdType="pubmed">15666211</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Clin Nutr. 2004 Sep;80(3):604-13</Citation><ArticleIdList><ArticleId IdType="pubmed">15321799</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Genet. 2002 Mar;18(3):134-41</Citation><ArticleIdList><ArticleId IdType="pubmed">11858837</ArticleId></ArticleIdList></Reference><Reference><Citation>Nutr Cancer. 1997;27(1):26-30</Citation><ArticleIdList><ArticleId IdType="pubmed">8970178</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2010 Jun;153(2):384-95</Citation><ArticleIdList><ArticleId IdType="pubmed">20427466</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 1996 Apr;110(4):1055-61</Citation><ArticleIdList><ArticleId IdType="pubmed">8934621</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2009 Jul;150(3):1219-34</Citation><ArticleIdList><ArticleId IdType="pubmed">19458117</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2009 Sep;21(9):2563-77</Citation><ArticleIdList><ArticleId IdType="pubmed">19767455</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3468-73</Citation><ArticleIdList><ArticleId IdType="pubmed">16492731</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Canada</li></country></list><tree><noCountry><name sortKey="Alting Mees, Michelle" sort="Alting Mees, Michelle" uniqKey="Alting Mees M" first="Michelle" last="Alting-Mees">Michelle Alting-Mees</name><name 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